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  5. Sam_g24887

Sam_g24887


Description : translation elongation factor *(EF-Tu) & original description: none


Gene families : OG0001305 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24887

Target Alias Description ECC score Gene Family Method Actions
AT4G02930 No alias GTP binding Elongation factor Tu family protein 0.04 OrthoFinder output from all 47 species
Aop_g11193 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Cba_g07152 No alias translation elongation factor *(EF-Tu) & original... 0.04 OrthoFinder output from all 47 species
Ceric.33G051100.1 Ceric.33G051100 translation elongation factor *(EF-Tu) & original... 0.08 OrthoFinder output from all 47 species
Cre06.g259150 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Ehy_g15550 No alias translation elongation factor *(EF-Tu) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os03g63410.1 LOC_Os03g63410 EF-Tu translation elongation factor 0.02 OrthoFinder output from all 47 species
Len_g01241 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
MA_58335g0010 No alias EF-Tu translation elongation factor 0.05 OrthoFinder output from all 47 species
Sam_g09872 No alias translation elongation factor *(EF-Tu) & original... 0.03 OrthoFinder output from all 47 species
Solyc06g008940.4.1 Solyc06g008940 EF-Tu translation elongation factor 0.03 OrthoFinder output from all 47 species
Solyc09g073000.3.1 Solyc09g073000 EF-Tu translation elongation factor 0.03 OrthoFinder output from all 47 species
Spa_g01140 No alias translation elongation factor *(EF-Tu) & original... 0.06 OrthoFinder output from all 47 species
Tin_g06040 No alias translation elongation factor *(EF-Tu) & original... 0.07 OrthoFinder output from all 47 species
Zm00001e006373_P001 Zm00001e006373 EF-Tu translation elongation factor 0.04 OrthoFinder output from all 47 species
Zm00001e011649_P001 Zm00001e011649 EF-Tu translation elongation factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018142 protein-DNA covalent cross-linking IEP HCCA
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 64 257
IPR004160 Transl_elong_EFTu/EF1A_C 355 448
IPR004161 EFTu-like_2 281 350
No external refs found!