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  5. Sam_g24751

Sam_g24751


Description : component *(uS9m) of small mitoribosomal-subunit proteome & original description: none


Gene families : OG0002624 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002624_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24751
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00218530 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
AT3G49080 No alias Ribosomal protein S5 domain 2-like superfamily protein 0.05 OrthoFinder output from all 47 species
Als_g08459 No alias component *(uS9m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aop_g10959 No alias component *(uS9m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Dcu_g01558 No alias component *(uS9m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01036122001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Gb_37974 No alias component mtRPS9 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
LOC_Os07g46440.1 LOC_Os07g46440 component mtRPS9 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Len_g11641 No alias component *(uS9m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Pir_g01220 TWN3, RPS9 component *(uS9c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002131 No alias component *(uS9m) of small mitoribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020559 TWN3, RPS9 component *(uS9c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Tin_g01995 No alias component *(uS9m) of small mitoribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e035755_P001 Zm00001e035755 component mtRPS9 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000077 DNA damage checkpoint signaling IEP HCCA
MF GO:0000213 tRNA-intron endonuclease activity IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP HCCA
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0030896 checkpoint clamp complex IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042770 signal transduction in response to DNA damage IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
InterPro domains Description Start Stop
IPR000754 Ribosomal_S9 294 414
No external refs found!