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  5. Sam_g24635

Sam_g24635


Description : not classified & original description: none


Gene families : OG0000728 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000728_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24635

Target Alias Description ECC score Gene Family Method Actions
Adi_g011575 ATCRE1, WOL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035241 ATCRE1, WOL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036246 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055879 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080396 HK5, AHK5, CKI2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111900 ATCRE1, WOL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0020.g015385 ATCRE1, WOL,... not classified & original description: CDS=1450-4740 0.02 OrthoFinder output from all 47 species
Azfi_s0193.g057151 ATCRE1, WOL,... not classified & original description: CDS=363-3515 0.03 OrthoFinder output from all 47 species
Cba_g17577 ATCRE1, WOL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g16985 ATCRE1, WOL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_9968645g0010 AHK2, HK2 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g13450.1 ATCRE1, WOL,... Histidine kinase 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g05002 ATCRE1, WOL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49621 ATCRE1, WOL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05663 ATCRE1, WOL,... not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007895 MASE1 389 501
IPR007895 MASE1 31 214
IPR003661 HisK_dim/P 545 610
IPR001789 Sig_transdc_resp-reg_receiver 1007 1076
IPR003594 HATPase_C 657 868
No external refs found!