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  5. Sam_g24538

Sam_g24538


Description : not classified & original description: none


Gene families : OG0007426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007426_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24538

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00233710 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Aev_g13449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20006 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g52011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G008200.1 Ceric.02G008200 not classified & original description: pacid=50584449... 0.03 OrthoFinder output from all 47 species
Dac_g27602 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05000 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g11981 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Mp5g13240.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g19202 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g43562 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g081430.4.1 Solyc01g081430 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e002523_P001 Zm00001e002523 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0030289 protein phosphatase 4 complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!