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  5. Sam_g24515

Sam_g24515


Description : EC_5.4 intramolecular transferase & original description: none


Gene families : OG0003044 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003044_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24515

Target Alias Description ECC score Gene Family Method Actions
AT1G68890 No alias magnesium ion binding;thiamin pyrophosphate... 0.03 OrthoFinder output from all 47 species
Adi_g056597 No alias EC_5.4 intramolecular transferase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z241600.1 Ceric.1Z241600 multifunctional protein *(PHYLLO) involved in... 0.03 OrthoFinder output from all 47 species
Dde_g51074 No alias EC_5.4 intramolecular transferase & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g20660.1 No alias isochorismate synthase. multifunctional phylloquinone... 0.02 OrthoFinder output from all 47 species
Ore_g43618 No alias EC_5.4 intramolecular transferase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e033927_P002 ICS2, ATICS2,... isochorismate synthase. isochorismate synthase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030976 thiamine pyrophosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032264 MenD_middle 836 1025
IPR029065 Enolase_C-like 1413 1593
IPR000073 AB_hydrolase_1 1696 1857
IPR015890 Chorismate_C 348 588
IPR011766 TPP_enzyme_TPP-bd 1071 1181
IPR012001 Thiamin_PyroP_enz_TPP-bd_dom 613 775
No external refs found!