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  5. Sam_g24452

Sam_g24452


Description : not classified & original description: none


Gene families : OG0000939 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000939_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24452
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00174p00014780 TTL3, VIT,... Inactive TPR repeat-containing thioredoxin TTL3... 0.02 OrthoFinder output from all 47 species
AT1G53300 TTL1 tetratricopetide-repeat thioredoxin-like 1 0.02 OrthoFinder output from all 47 species
Adi_g020034 TTL3, VIT not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g32635 TTL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10921 TTL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g13784 TTL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14242 TTL1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g57995 TTL1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.02G063800.1 TTL1, Ceric.02G063800 not classified & original description: pacid=50585538... 0.04 OrthoFinder output from all 47 species
Ceric.27G040400.1 TTL3, VIT,... not classified & original description: pacid=50605732... 0.03 OrthoFinder output from all 47 species
Dac_g01798 TTL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15649 TTL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005875001 TPR14 TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01014216001 TTL1 TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01020699001 TTL3, VIT Inactive TPR repeat-containing thioredoxin TTL3... 0.02 OrthoFinder output from all 47 species
LOC_Os05g11990.1 TTL1, LOC_Os05g11990 TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os05g50990.1 TTL4, LOC_Os05g50990 scaffold protein (TTL) of brassinosteroid signalling 0.03 OrthoFinder output from all 47 species
Len_g09795 TTL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10426265g0010 TTL1 scaffold protein (TTL) of brassinosteroid signalling 0.02 OrthoFinder output from all 47 species
Msp_g32641 TTL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g35116 TTL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09362 TTL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01359 TTL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001174 TTL1 not classified & original description: CDS=524-3337 0.03 OrthoFinder output from all 47 species
Smo168306 TTL1 TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Spa_g16173 TTL1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g02892 TTL1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g10854 TTL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14806 TTL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015876_P001 TPR14, Zm00001e015876 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e027870_P001 TTL1, Zm00001e027870 scaffold protein (TTL) of brassinosteroid signalling 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004476 mannose-6-phosphate isomerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013766 Thioredoxin_domain 840 927
IPR001440 TPR_1 735 768
IPR013105 TPR_2 473 502
No external refs found!