Sam_g24394

Description : component *(MLH1) of MLH1-PMS1 heterodimer & original description: none

Gene families : OG0003563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003563_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g24394

Target	Alias	Description	ECC score	Gene Family Method
AT4G09140	MLH1, ATMLH1	MUTL-homologue 1	0.02	OrthoFinder output from all 47 species
Adi_g018618	MLH1, ATMLH1	component *(MLH1) of MLH1-PMS1 heterodimer & original...	0.03	OrthoFinder output from all 47 species
Aev_g29114	MLH1, ATMLH1	component *(MLH1) of MLH1-PMS1 heterodimer & original...	0.02	OrthoFinder output from all 47 species
Ala_g12715	MLH1, ATMLH1	component *(MLH1) of MLH1-PMS1 heterodimer & original...	0.04	OrthoFinder output from all 47 species
Ceric.1Z069400.1	MLH1, ATMLH1,...	component *(MLH1) of MLH1-PMS1 heterodimer & original...	0.03	OrthoFinder output from all 47 species
Dac_g43000	MLH1, ATMLH1	component *(MLH1) of MLH1-PMS1 heterodimer & original...	0.03	OrthoFinder output from all 47 species
Dde_g00829	MLH1, ATMLH1	component *(MLH1) of MLH1-PMS1 heterodimer & original...	0.03	OrthoFinder output from all 47 species
LOC_Os01g72880.1	MLH1, ATMLH1,...	component MLH1 of MLH1-PMS1 heterodimer	0.03	OrthoFinder output from all 47 species
MA_10427871g0010	MLH1, ATMLH1	component MLH1 of MLH1-PMS1 heterodimer	0.03	OrthoFinder output from all 47 species
Nbi_g14749	MLH1, ATMLH1	component *(MLH1) of MLH1-PMS1 heterodimer & original...	0.02	OrthoFinder output from all 47 species
Ore_g32916	MLH1, ATMLH1	component *(MLH1) of MLH1-PMS1 heterodimer & original...	0.03	OrthoFinder output from all 47 species
Ppi_g13740	MLH1, ATMLH1	component *(MLH1) of MLH1-PMS1 heterodimer & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013507	DNA_mismatch_S5_2-like	67	188
IPR032189	Mlh1_C	285	575

External Links

No external refs found!

Sam_g24394

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation