Sam_g24035

Description : scaffold protein NFU of plastidial SUF system transfer phase & original description: none

Gene families : OG0003751 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003751_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g24035

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00236430	ATCNFU3, NFU3,...	Coenzyme metabolism.iron-sulfur cluster assembly...	0.03	OrthoFinder output from all 47 species
Als_g09300	NFU2, ATCNFU2	scaffold protein NFU of plastidial SUF system transfer...	0.03	OrthoFinder output from all 47 species
Aop_g67746	NFU2, ATCNFU2	scaffold protein NFU of plastidial SUF system transfer...	0.04	OrthoFinder output from all 47 species
Ceric.10G025000.1	NFU2, ATCNFU2,...	scaffold protein NFU of plastidial SUF system transfer...	0.02	OrthoFinder output from all 47 species
Cre18.g748447	NFU2, ATCNFU2	Coenzyme metabolism.iron-sulfur cluster assembly...	0.02	OrthoFinder output from all 47 species
Ehy_g27738	NFU2, ATCNFU2	scaffold protein NFU of plastidial SUF system transfer...	0.03	OrthoFinder output from all 47 species
Gb_40179	NFU2, ATCNFU2	scaffold protein NFU of plastidial SUF system transfer phase	0.05	OrthoFinder output from all 47 species
LOC_Os06g47940.1	ATCNFU3, NFU3,...	scaffold protein NFU of plastidial SUF system transfer phase	0.04	OrthoFinder output from all 47 species
LOC_Os11g07916.1	NFU2, ATCNFU2,...	scaffold protein NFU of plastidial SUF system transfer phase	0.03	OrthoFinder output from all 47 species
Nbi_g08868	NFU2, ATCNFU2	scaffold protein NFU of plastidial SUF system transfer...	0.02	OrthoFinder output from all 47 species
Ore_g08081	NFU2, ATCNFU2	scaffold protein NFU of plastidial SUF system transfer...	0.03	OrthoFinder output from all 47 species
Smo230831	NFU2, ATCNFU2	Coenzyme metabolism.iron-sulfur cluster assembly...	0.02	OrthoFinder output from all 47 species
Zm00001e030263_P002	ATCNFU3, NFU3,...	scaffold protein NFU of plastidial SUF system transfer phase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005506	iron ion binding	IEA	Interproscan
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016226	iron-sulfur cluster assembly	IEA	Interproscan
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0031163	metallo-sulfur cluster assembly	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	IEA	Interproscan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001075	NIF_FeS_clus_asmbl_NifU_C	119	183
IPR001075	NIF_FeS_clus_asmbl_NifU_C	200	262

External Links

No external refs found!

Sam_g24035

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation