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  5. Sam_g23996

Sam_g23996


Description : ubiquitin-proteasome shuttle factor *(DSK2) & original description: none


Gene families : OG0001912 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001912_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g23996

Target Alias Description ECC score Gene Family Method Actions
Adi_g057053 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.02 OrthoFinder output from all 47 species
Aev_g13863 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species
Ala_g14983 No alias ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.02 OrthoFinder output from all 47 species
Aob_g05984 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g11958 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.05 OrthoFinder output from all 47 species
Gb_09865 DSK2 autophagic adaptor protein (DSK2) 0.04 OrthoFinder output from all 47 species
Msp_g05701 No alias ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.02 OrthoFinder output from all 47 species
Ore_g16088 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species
Ore_g23080 DSK2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25539 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species
Ore_g33853 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g13508 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0112.g020729 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004535 poly(A)-specific ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0008484 sulfuric ester hydrolase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 112 180
IPR015940 UBA 576 612
No external refs found!