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  5. Sam_g23850

Sam_g23850


Description : regulatory factor *(RIQ) of thylakoid grana stacking & original description: none


Gene families : OG0004759 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004759_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g23850

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00154p00066950 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT5G08050 No alias Protein of unknown function (DUF1118) 0.07 OrthoFinder output from all 47 species
Adi_g021665 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.06 OrthoFinder output from all 47 species
Adi_g046840 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
Aev_g00608 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.02 OrthoFinder output from all 47 species
Ala_g00963 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.07 OrthoFinder output from all 47 species
Aob_g09320 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.03 OrthoFinder output from all 47 species
Aop_g09516 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.06 OrthoFinder output from all 47 species
Cba_g04313 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
Ceric.34G020000.1 Ceric.34G020000 regulatory factor *(RIQ) of thylakoid grana stacking &... 0.03 OrthoFinder output from all 47 species
Dac_g00528 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.03 OrthoFinder output from all 47 species
Dde_g01981 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
GSVIVT01008106001 No alias No description available 0.07 OrthoFinder output from all 47 species
Gb_03565 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g38640.1 LOC_Os12g38640 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g11447 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.03 OrthoFinder output from all 47 species
Len_g44742 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.08 OrthoFinder output from all 47 species
Lfl_g03718 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.06 OrthoFinder output from all 47 species
MA_114154g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g08411 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.03 OrthoFinder output from all 47 species
Nbi_g08483 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
Ore_g09667 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.05 OrthoFinder output from all 47 species
Pir_g59758 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.03 OrthoFinder output from all 47 species
Pnu_g10046 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.06 OrthoFinder output from all 47 species
Ppi_g10814 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.02 OrthoFinder output from all 47 species
Smo415599 No alias No description available 0.02 OrthoFinder output from all 47 species
Spa_g03718 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.07 OrthoFinder output from all 47 species
Spa_g04667 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.03 OrthoFinder output from all 47 species
Tin_g15216 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
Zm00001e002989_P001 Zm00001e002989 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR009500 DUF1118 141 253
No external refs found!