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  5. Sam_g23830

Sam_g23830


Description : not classified & original description: none


Gene families : OG0001249 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001249_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g23830
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AT3G02890 No alias RING/FYVE/PHD zinc finger superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g035704 No alias regulatory component *(AIPP2) of chromatin silencing... 0.03 OrthoFinder output from all 47 species
Aob_g12429 No alias regulatory component *(AIPP2) of chromatin silencing... 0.03 OrthoFinder output from all 47 species
Aspi01Gene14039.t1 Aspi01Gene14039 regulatory component *(AIPP2) of chromatin silencing... 0.03 OrthoFinder output from all 47 species
Azfi_s0080.g038469 No alias regulatory component *(AIPP2) of chromatin silencing... 0.03 OrthoFinder output from all 47 species
Ceric.07G012300.1 Ceric.07G012300 not classified & original description: pacid=50627728... 0.03 OrthoFinder output from all 47 species
LOC_Os12g06464.1 LOC_Os12g06464 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pnu_g24121 No alias component *(MED19) of head module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Solyc06g066200.2.1 Solyc06g066200 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g32161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!