Sam_g20834

Description : component *(eL13) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000911 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000911_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g20834
Cluster	HCCA: Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00239970	BBC1, RSU2,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
AMTR_s00029p00111280	BBC1, RSU2,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT3G49010	BBC1, RSU2, ATBBC1	breast basic conserved 1	0.13	OrthoFinder output from all 47 species
AT5G23900	No alias	Ribosomal protein L13e family protein	0.06	OrthoFinder output from all 47 species
Adi_g014303	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g124336	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g07445	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ala_g38739	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Als_g02247	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g19346	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g21602	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g24759	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g02822	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g01579	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aop_g02719	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g19290	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0050.g031133	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cba_g28227	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.06G067700.1	BBC1, RSU2,...	component *(eL13) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Ceric.21G071200.1	BBC1, RSU2,...	component *(eL13) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.36	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Cre14.g630100	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Dac_g06660	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dac_g15740	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g00643	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g26018	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01027212001	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
GSVIVT01030767001	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
LOC_Os03g37970.1	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os06g02510.2	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Lfl_g24377	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g31949	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Mp1g04920.1	BBC1, RSU2, ATBBC1	component RPL13 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Mp2g19790.1	BBC1, RSU2, ATBBC1	component RPL13 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Msp_g00929	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Msp_g38787	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g00223	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ore_g11184	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g04222	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g17440	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g54804	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c1_26280V3.1	BBC1, RSU2,...	breast basic conserved 1	0.09	OrthoFinder output from all 47 species
Ppi_g19558	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g21419	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g43557	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000099	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0172.g024435	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g17930	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g23043	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g41430	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g43982	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g45342	No alias	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo165483	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Smo266648	BBC1, RSU2, ATBBC1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Solyc08g075700.3.1	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Solyc12g096150.2.1	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Spa_g05295	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Spa_g14938	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g24037	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Spa_g31672	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g43259	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Tin_g01593	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Tin_g03031	BBC1, RSU2, ATBBC1	component *(eL13) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Zm00001e018804_P001	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Zm00001e028430_P003	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Zm00001e031172_P001	BBC1, RSU2,...	component RPL13 of LSU proteome component	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0030414	peptidase inhibitor activity	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
MF	GO:0061134	peptidase regulator activity	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001380	Ribosomal_L13e	8	187

External Links

No external refs found!

Sam_g20834

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation