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  5. Sam_g20228

Sam_g20228


Description : component *(eL14) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0007785 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007785_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g20228
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Adi_g097838 No alias component *(eL14) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g55025 No alias component *(eL14) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Msp_g36498 No alias component *(eL14) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g06980 No alias component *(eL14) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g17561 No alias component *(eL14) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g32132 No alias component *(eL14) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g37620 No alias component *(eL14) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004807 triose-phosphate isomerase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005751 mitochondrial respiratory chain complex IV IEP HCCA
CC GO:0005861 troponin complex IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
BP GO:0031109 microtubule polymerization or depolymerization IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
CC GO:0045277 respiratory chain complex IV IEP HCCA
BP GO:0046785 microtubule polymerization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051258 protein polymerization IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR002784 Ribosomal_L14e_dom 50 123
IPR005824 KOW 11 40
No external refs found!