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  5. Sam_g19713

Sam_g19713


Description : RsmD-type rRNA methyltransferase & original description: none


Gene families : OG0005430 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19713

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00240660 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Aspi01Gene31857.t1 Aspi01Gene31857 RsmD-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.26G002400.1 Ceric.26G002400 RsmD-type rRNA methyltransferase & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000269.115 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g14054 No alias RsmD-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g29421 No alias RsmD-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g52640.2 LOC_Os03g52640 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g11092 No alias RsmD-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g01027 No alias RsmD-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Mp3g18100.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pnu_g10244 No alias RsmD-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18752 No alias RsmD-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g067540.3.1 Solyc02g067540 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!