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  5. Sam_g19689

Sam_g19689


Description : component *(PININ) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0004599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19689

Target Alias Description ECC score Gene Family Method Actions
Aop_g19581 No alias component *(PININ) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aspi01Gene37717.t1 Aspi01Gene37717 component *(PININ) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Len_g16030 No alias component *(PININ) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Spa_g10046 No alias component *(PININ) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006786 Pinin_SDK_MemA 179 306
No external refs found!