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  5. Sam_g19568

Sam_g19568


Description : CMF transcription factor & original description: none


Gene families : OG0001446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001446_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19568
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AT3G12890 ASML2 activator of spomin::LUC2 0.03 OrthoFinder output from all 47 species
AT5G53420 No alias CCT motif family protein 0.03 OrthoFinder output from all 47 species
AT5G59990 No alias CCT motif family protein 0.02 OrthoFinder output from all 47 species
Adi_g078688 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32370 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0052.g031598 No alias not classified & original description: CDS=1-1092 0.03 OrthoFinder output from all 47 species
Cre07.g351550 ASML2 No description available 0.01 OrthoFinder output from all 47 species
Dcu_g14890 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g32266 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os12g16160.1 LOC_Os12g16160 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g24388 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016744 transketolase or transaldolase activity IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 437 478
No external refs found!