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  5. Sam_g19443

Sam_g19443


Description : deubiquitinase *(UBP5/8-11) & original description: none


Gene families : OG0001745 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001745_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19443

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00234520 ATUBP5, UBP5,... Protein degradation.peptidase families.cysteine-type... 0.02 OrthoFinder output from all 47 species
AT2G40930 ATUBP5, UBP5, PDE323 ubiquitin-specific protease 5 0.02 OrthoFinder output from all 47 species
AT4G10570 UBP9 ubiquitin-specific protease 9 0.03 OrthoFinder output from all 47 species
AT4G10590 UBP10 ubiquitin-specific protease 10 0.03 OrthoFinder output from all 47 species
Aev_g07324 ATUBP5, UBP5, PDE323 deubiquitinase *(UBP5/8-11) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00801 UBP10 deubiquitinase *(UBP5/8-11) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0039.g026427 ATUBP5, UBP5, PDE323 deubiquitinase *(UBP5/8-11) & original description: CDS=459-2849 0.02 OrthoFinder output from all 47 species
Ceric.33G024300.1 ATUBP5, UBP5,... deubiquitinase *(UBP5/8-11) & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g13079 ATUBP5, UBP5, PDE323 deubiquitinase *(UBP5/8-11) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01001899001 ATUBP5, UBP5, PDE323 Protein degradation.peptidase families.cysteine-type... 0.04 OrthoFinder output from all 47 species
GSVIVT01019677001 UBP10 Protein degradation.peptidase families.cysteine-type... 0.04 OrthoFinder output from all 47 species
GSVIVT01022582001 UBP8 Protein degradation.peptidase families.cysteine-type... 0.04 OrthoFinder output from all 47 species
LOC_Os11g28360.1 ATUBP5, UBP5,... Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os11g28365.1 ATUBP5, UBP5,... deubiquitinase (UBP5|8-11) 0.03 OrthoFinder output from all 47 species
LOC_Os12g42600.1 UBP8, LOC_Os12g42600 deubiquitinase (UBP5|8-11) 0.03 OrthoFinder output from all 47 species
Len_g08177 ATUBP5, UBP5, PDE323 deubiquitinase *(UBP5/8-11) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02368 ATUBP5, UBP5, PDE323 deubiquitinase *(UBP5/8-11) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10425850g0010 ATUBP5, UBP5, PDE323 Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10436012g0010 ATUBP5, UBP5, PDE323 deubiquitinase (UBP5|8-11) 0.03 OrthoFinder output from all 47 species
MA_11753g0010 UBP9 deubiquitinase (UBP5|8-11) 0.03 OrthoFinder output from all 47 species
Mp3g14190.1 ATUBP5, UBP5, PDE323 deubiquitinase (UBP5|8-11) 0.02 OrthoFinder output from all 47 species
Msp_g00705 ATUBP5, UBP5, PDE323 deubiquitinase *(UBP5/8-11) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021975 UBP10 deubiquitinase *(UBP5/8-11) & original description: CDS=219-2969 0.02 OrthoFinder output from all 47 species
Smo61965 UBP9 Protein degradation.peptidase families.cysteine-type... 0.03 OrthoFinder output from all 47 species
Solyc08g083300.4.1 UBP9, Solyc08g083300 deubiquitinase (UBP5|8-11) 0.07 OrthoFinder output from all 47 species
Solyc09g019970.3.1 ATUBP5, UBP5,... deubiquitinase (UBP5|8-11) 0.04 OrthoFinder output from all 47 species
Zm00001e008908_P001 ATUBP5, UBP5,... deubiquitinase (UBP5|8-11) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP HCCA
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015914 phospholipid transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 421 931
IPR006615 Pept_C19_DUSP 42 147
IPR028135 Ub_USP-typ 173 247
No external refs found!