Sam_g19395

Description : large subunit beta of AP-1 trans-Golgi network cargo adaptor complex & original description: none

Gene families : OG0001612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001612_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g19395

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00095780	evm_27.TU.AmTr_v1...	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	OrthoFinder output from all 47 species
Adi_g013457	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g078682	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Ala_g16231	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Aob_g04482	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.03	OrthoFinder output from all 47 species
Aob_g09058	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020592.38	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020592.39	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cre05.g234665	No alias	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.02	OrthoFinder output from all 47 species
Dcu_g07725	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
GSVIVT01019391001	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	OrthoFinder output from all 47 species
Lfl_g02298	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Spa_g16508	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.02	OrthoFinder output from all 47 species
Zm00001e001693_P001	Zm00001e001693	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Zm00001e038184_P001	Zm00001e038184	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	HCCA
CC	GO:0000439	transcription factor TFIIH core complex	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
MF	GO:0120227	acyl-CoA binding	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901567	fatty acid derivative binding	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002553	Clathrin/coatomer_adapt-like_N	16	533
IPR015151	B-adaptin_app_sub_C	790	904
IPR008152	Clathrin_a/b/g-adaptin_app_Ig	683	778

External Links

No external refs found!

Sam_g19395

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation