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  5. Sam_g19373

Sam_g19373


Description : not classified & original description: none


Gene families : OG0005452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19373
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
Adi_g021115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.20G028100.1 Ceric.20G028100 not classified & original description: pacid=50566612... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.17 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Cre12.g522850 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Dac_g07921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g49902 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01028137001 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g19530.1 LOC_Os03g19530 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Lfl_g04177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_50249g0010 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Mp4g12240.1 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ore_g18559 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013422 No alias not classified & original description: CDS=101-1306 0.02 OrthoFinder output from all 47 species
Smo51367 No alias DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g079330.3.1 Solyc01g079330 DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g56095 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001454_P001 Zm00001e001454 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Zm00001e038325_P002 Zm00001e038325 DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 464 570
IPR011545 DEAD/DEAH_box_helicase_dom 254 425
No external refs found!