Description : regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway & original description: none
Gene families : OG0005389 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005389_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Lfl_g27281 | |
Cluster | HCCA: Cluster_88 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G18600 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g09581 | No alias | regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.02G070800.1 | Ceric.02G070800 | regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... | 0.05 | OrthoFinder output from all 47 species | |
Cre07.g314900 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os03g58810.1 | LOC_Os03g58810 | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.02 | OrthoFinder output from all 47 species | |
Mp7g12890.1 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g04508 | No alias | regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g08369 | No alias | regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g30854 | No alias | regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e011842_P001 | Zm00001e011842 | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000012 | single strand break repair | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003684 | damaged DNA binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
CC | GO:0030117 | membrane coat | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0043021 | ribonucleoprotein complex binding | IEP | HCCA |
MF | GO:0043022 | ribosome binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
MF | GO:0044877 | protein-containing complex binding | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
No external refs found! |