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  5. Sam_g19131

Sam_g19131


Description : helicase component *(eIF4A3) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0000532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19131

Target Alias Description ECC score Gene Family Method Actions
Adi_g022928 EIF4A-III not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13925 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Cre06.g298650 EIF4A-2 Protein biosynthesis.translation initiation.mRNA... 0.01 OrthoFinder output from all 47 species
LOC_Os01g45190.1 EIF4A-III, LOC_Os01g45190 helicase component eIF4A3 of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
LOC_Os03g36930.1 EIF4A-III, LOC_Os03g36930 helicase component eIF4A3 of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Mp2g02760.1 EIF4A-2 mRNA unwinding factor (eIF4A) 0.01 OrthoFinder output from all 47 species
Mp4g09540.1 EIF4A-III helicase component eIF4A3 of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Sam_g35004 No alias mRNA unwinding factor *(eIF4A)) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032422 purine-rich negative regulatory element binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 60 222
IPR001650 Helicase_C 261 369
No external refs found!