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  5. Sam_g19035

Sam_g19035


Description : component *(RACK1) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19035

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00058690 RACK1B_AT,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT1G18080 ATARCA, RACK1A, RACK1A_AT Transducin/WD40 repeat-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G48630 RACK1B_AT receptor for activated C kinase 1B 0.08 OrthoFinder output from all 47 species
AT3G18130 RACK1C_AT receptor for activated C kinase 1C 0.07 OrthoFinder output from all 47 species
Adi_g098685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g08943 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Als_g32831 RACK1B_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g00477 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g06871 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0113.g045894 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ceric.02G088700.1 RACK1C_AT,... component *(RACK1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ceric.34G016800.1 RACK1C_AT,... component *(RACK1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000169.6 RACK1C_AT Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
Cre06.g278222 RACK1C_AT Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Dac_g14184 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
GSVIVT01008395001 MYB4R1, AtMYB4R1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Gb_33900 RACK1B_AT associated component RACK1 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os01g49290.1 RACK1C_AT, LOC_Os01g49290 associated component RACK1 of SSU proteome 0.06 OrthoFinder output from all 47 species
LOC_Os05g47890.1 RACK1C_AT, LOC_Os05g47890 associated component RACK1 of SSU proteome 0.02 OrthoFinder output from all 47 species
MA_10435947g0010 RACK1B_AT Guanine nucleotide-binding protein subunit beta-like... 0.05 OrthoFinder output from all 47 species
Mp3g15630.1 RACK1C_AT associated component RACK1 of SSU proteome 0.11 OrthoFinder output from all 47 species
Msp_g08733 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Pir_g46221 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo266532 RACK1C_AT Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
Solyc03g119040.3.1 RACK1B_AT, Solyc03g119040 associated component RACK1 of SSU proteome 0.07 OrthoFinder output from all 47 species
Solyc06g069010.3.1 RACK1B_AT, Solyc06g069010 associated component RACK1 of SSU proteome 0.05 OrthoFinder output from all 47 species
Spa_g01709 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Spa_g16013 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g25398 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g25399 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Tin_g04974 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Tin_g45000 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e026456_P001 RACK1C_AT, Zm00001e026456 associated component RACK1 of SSU proteome 0.1 OrthoFinder output from all 47 species
Zm00001e032340_P001 RACK1C_AT, Zm00001e032340 associated component RACK1 of SSU proteome 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 96 132
IPR001680 WD40_repeat 145 178
IPR001680 WD40_repeat 186 220
IPR001680 WD40_repeat 56 90
IPR001680 WD40_repeat 285 310
IPR001680 WD40_repeat 9 44
IPR001680 WD40_repeat 234 260
No external refs found!