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  5. Sam_g18698

Sam_g18698


Description : not classified & original description: none


Gene families : OG0002179 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002179_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g18698
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Cba_g01600 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06528 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G076800.1 Ceric.02G076800 not classified & original description: pacid=50584689... 0.02 OrthoFinder output from all 47 species
Ore_g06579 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06738 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0174.g024513 No alias EC_2.4 glycosyltransferase & original description: CDS=100-1503 0.03 OrthoFinder output from all 47 species
Solyc05g011930.4.1 Solyc05g011930 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032422 purine-rich negative regulatory element binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!