Sam_g18625

Description : deubiquitinase *(UBP12-13) & original description: none

Gene families : OG0001048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001048_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g18625

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00140970	UBP13,...	Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT3G11910	UBP13	ubiquitin-specific protease 13	0.04	OrthoFinder output from all 47 species
AT5G06600	UBP12	ubiquitin-specific protease 12	0.03	OrthoFinder output from all 47 species
Adi_g022336	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g022452	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.06	OrthoFinder output from all 47 species
Adi_g058359	UBP13	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g058360	UBP13	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g060998	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.07	OrthoFinder output from all 47 species
Adi_g109500	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g06794	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g21287	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g16236	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g19646	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g05134	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g11910	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g29323	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g32969	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g04496	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g20270	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09168	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene13913.t1	UBP12, Aspi01Gene13913	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene53263.t1	UBP12, Aspi01Gene53263	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.04G077200.1	UBP13, Ceric.04G077200	deubiquitinase *(UBP12-13) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.13G025300.1	UBP13, Ceric.13G025300	deubiquitinase *(UBP12-13) & original description:...	0.06	OrthoFinder output from all 47 species
Ceric.14G040100.1	UBP12, Ceric.14G040100	deubiquitinase *(UBP12-13) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.24G037500.1	UBP12, Ceric.24G037500	deubiquitinase *(UBP12-13) & original description:...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021350.30	UBP12	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
Cre07.g336200	UBP12	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g06495	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g46962	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g50110	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g18754	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01022498001	UBP12	Protein degradation.peptidase families.cysteine-type...	0.04	OrthoFinder output from all 47 species
GSVIVT01034603001	UBP12	Protein degradation.peptidase families.cysteine-type...	0.04	OrthoFinder output from all 47 species
Gb_02820	UBP12	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
Gb_04866	UBP13	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
LOC_Os01g56490.1	UBP13, LOC_Os01g56490	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
LOC_Os07g06950.1	UBP12, LOC_Os07g06950	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	OrthoFinder output from all 47 species
LOC_Os11g36470.1	UBP13, LOC_Os11g36470	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	OrthoFinder output from all 47 species
LOC_Os12g30540.1	UBP12, LOC_Os12g30540	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	OrthoFinder output from all 47 species
Len_g10766	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05026	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
MA_10426331g0010	UBP12	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.02	OrthoFinder output from all 47 species
MA_10428769g0010	UBP12	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.02	OrthoFinder output from all 47 species
MA_32639g0010	UBP12	ubiquitin protease (USP7)	0.03	OrthoFinder output from all 47 species
MA_75085g0010	UBP13	deubiquitinase (UBP12-13)	0.05	OrthoFinder output from all 47 species
Mp3g15430.1	UBP12	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
Ore_g40484	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.07	OrthoFinder output from all 47 species
Pir_g01064	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g16380	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g16929	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.02	OrthoFinder output from all 47 species
Smo444302	UBP12	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
Solyc05g055090.4.1	UBP12, Solyc05g055090	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
Solyc10g081610.2.1	UBP12, Solyc10g081610	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
Solyc11g071700.2.1	UBP12, Solyc11g071700	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.02	OrthoFinder output from all 47 species
Spa_g14809	UBP12	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e017788_P001	UBP12, Zm00001e017788	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
Zm00001e032871_P004	UBP12, Zm00001e032871	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.09	OrthoFinder output from all 47 species
Zm00001e039540_P003	UBP12, Zm00001e039540	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006906	vesicle fusion	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016050	vesicle organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0048280	vesicle fusion with Golgi apparatus	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0061025	membrane fusion	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090174	organelle membrane fusion	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002083	MATH/TRAF_dom	57	175
IPR024729	USP7_ICP0-binding_dom	618	870
IPR029346	USP_C	880	1089
IPR001394	Peptidase_C19_UCH	193	514

External Links

No external refs found!

Sam_g18625

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation