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  5. Sam_g17866

Sam_g17866


Description : rRNA methyltransferase *(NOP2) & original description: none


Gene families : OG0004210 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17866
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT4G26600 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.12 OrthoFinder output from all 47 species
AT5G55920 OLI2 S-adenosyl-L-methionine-dependent methyltransferases... 0.03 OrthoFinder output from all 47 species
Adi_g015441 No alias rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47688 OLI2 rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05130 OLI2 rRNA methyltransferase *(NOP2) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.38G044600.1 Ceric.38G044600 rRNA methyltransferase *(NOP2) & original description:... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000114.21 OLI2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre06.g273413 OLI2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Dcu_g13909 No alias rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09182 No alias rRNA methyltransferase *(NOP2) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014717001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01014718001 OLI2 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Gb_02482 No alias OLI2 LSU processome maturation factor 0.04 OrthoFinder output from all 47 species
LOC_Os02g49270.1 LOC_Os02g49270 OLI2 LSU processome maturation factor 0.1 OrthoFinder output from all 47 species
LOC_Os09g37860.1 LOC_Os09g37860 OLI2 LSU processome maturation factor 0.06 OrthoFinder output from all 47 species
Lfl_g01804 OLI2 rRNA methyltransferase *(NOP2) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10427534g0030 No alias OLI2 LSU processome maturation factor 0.04 OrthoFinder output from all 47 species
Mp6g04100.1 No alias OLI2 LSU processome maturation factor 0.07 OrthoFinder output from all 47 species
Ore_g19331 OLI2 rRNA methyltransferase *(NOP2) & original description: none 0.03 OrthoFinder output from all 47 species
Smo437511 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Solyc02g079415.1.1 Solyc02g079415 OLI2 LSU processome maturation factor 0.03 OrthoFinder output from all 47 species
Solyc07g052110.4.1 Solyc07g052110 OLI2 LSU processome maturation factor 0.07 OrthoFinder output from all 47 species
Spa_g52054 No alias rRNA methyltransferase *(NOP2) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015692_P001 Zm00001e015692 OLI2 LSU processome maturation factor 0.03 OrthoFinder output from all 47 species
Zm00001e023394_P001 Zm00001e023394 OLI2 LSU processome maturation factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR031341 Methyltr_RsmF_N 162 247
IPR001678 MeTrfase_RsmB/NOP2 251 461
No external refs found!