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  5. Sam_g17813

Sam_g17813


Description : organelle RNA splicing factor *(APO) & original description: none


Gene families : OG0001840 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001840_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17813

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00027190 emb1629, APO2,... APO protein 2, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g022368 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07882 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05432 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene58994.t1 emb1629, APO2,... organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0200.g057514 emb1629, APO2 organelle RNA splicing factor *(APO) & original... 0.04 OrthoFinder output from all 47 species
Ceric.26G036600.1 emb1629, APO2,... organelle RNA splicing factor *(APO) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g25543 APO1 organelle RNA splicing factor *(APO) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01018392001 APO1 APO protein 1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01023615001 emb1629, APO2 APO protein 2, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_29513 APO1 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_36551 emb1629, APO2 APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os02g50010.1 emb1629, APO2,... APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os04g52520.4 APO1, LOC_Os04g52520 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g20099 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
MA_136047g0010 emb1629, APO2 APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_931234g0010 APO1 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pir_g00939 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g080250.4.1 APO1, Solyc08g080250 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc09g009400.4.1 APO3, Solyc09g009400 APO protein 3, mitochondrial OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g24352 APO1 organelle RNA splicing factor *(APO) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g18551 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006942_P002 APO1, Zm00001e006942 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e023481_P001 emb1629, APO2,... APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR023342 APO_dom 42 227
IPR023342 APO_dom 303 415
No external refs found!