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  5. Sam_g17519

Sam_g17519


Description : component *(MIP2) of DSL1 (Depends-on-SLY1) complex & original description: none


Gene families : OG0003564 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003564_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17519
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00267320 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane tethering.DSL1... 0.07 OrthoFinder output from all 47 species
AT5G24350 No alias CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39... 0.1 OrthoFinder output from all 47 species
Adi_g020048 No alias component *(MIP2) of DSL1 (Depends-on-SLY1) complex &... 0.05 OrthoFinder output from all 47 species
Ala_g32533 No alias component *(MIP2) of DSL1 (Depends-on-SLY1) complex &... 0.08 OrthoFinder output from all 47 species
Azfi_s0004.g008801 No alias component *(MIP2) of DSL1 (Depends-on-SLY1) complex &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000076.139 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.01 OrthoFinder output from all 47 species
GSVIVT01038603001 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.06 OrthoFinder output from all 47 species
Gb_24496 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.03 OrthoFinder output from all 47 species
LOC_Os12g13150.1 LOC_Os12g13150 component MIP2 of DSL1 (Depends-on-SLY1) complex 0.02 OrthoFinder output from all 47 species
Lfl_g08209 No alias component *(MIP2) of DSL1 (Depends-on-SLY1) complex &... 0.03 OrthoFinder output from all 47 species
MA_10437135g0010 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.05 OrthoFinder output from all 47 species
MA_178977g0010 No alias MAG2-interacting protein 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_37482g0010 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.03 OrthoFinder output from all 47 species
MA_719625g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g11790.1 No alias component MIP2 of DSL1 (Depends-on-SLY1) complex 0.05 OrthoFinder output from all 47 species
Msp_g45041 No alias component *(MIP2) of DSL1 (Depends-on-SLY1) complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g29361 No alias component *(MIP2) of DSL1 (Depends-on-SLY1) complex &... 0.02 OrthoFinder output from all 47 species
Smo438861 No alias Vesicle trafficking.target membrane tethering.DSL1... 0.03 OrthoFinder output from all 47 species
Solyc03g082680.4.1 Solyc03g082680 component MIP2 of DSL1 (Depends-on-SLY1) complex 0.07 OrthoFinder output from all 47 species
Zm00001e027951_P001 Zm00001e027951 component MIP2 of DSL1 (Depends-on-SLY1) complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013244 Sec39_domain 596 1186
No external refs found!