Sam_g17246

Description : not classified & original description: none

Gene families : OG0002693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002693_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g17246

Target	Alias	Description	ECC score	Gene Family Method
AT5G55100	No alias	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein	0.02	OrthoFinder output from all 47 species
Als_g14000	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g48145	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0198.g057435	No alias	not classified & original description: CDS=75-2141	0.02	OrthoFinder output from all 47 species
Dcu_g42083	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g08834	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Mp6g19440.1	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Ore_g08697	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g42634	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Zm00001e028122_P004	Zm00001e028122	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
BP	GO:0015074	DNA integration	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
MF	GO:0017025	TBP-class protein binding	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140296	general transcription initiation factor binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000061	Surp	17	65

External Links

No external refs found!