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  5. Sam_g16365

Sam_g16365


Description : pre-mRNA splicing factor *(RBM25) & original description: none


Gene families : OG0002875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16365

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267030 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
AT1G60200 No alias splicing factor PWI domain-containing protein / RNA... 0.02 OrthoFinder output from all 47 species
Aob_g32231 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17534 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g58521 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.06G082400.1 Ceric.06G082400 pre-mRNA splicing factor *(RBM25) & original... 0.03 OrthoFinder output from all 47 species
Cre08.g375084 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g20400 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g31973 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os08g32100.1 LOC_Os08g32100 pre-mRNA splicing factor (RBM25) 0.03 OrthoFinder output from all 47 species
Len_g09390 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g39469 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
MA_96952g0010 No alias pre-mRNA splicing factor (RBM25) 0.02 OrthoFinder output from all 47 species
Ore_g40496 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11390 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g40329 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e022382_P002 Zm00001e022382 pre-mRNA splicing factor (RBM25) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 56 123
No external refs found!