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  5. Sam_g16342

Sam_g16342


Description : regulatory protein *(CYCB) of cell cycle & original description: none


Gene families : OG0000745 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000745_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16342

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00032080 CYCB2;3,... Cell cycle.regulation.cyclins.CYCB-type cyclin 0.11 OrthoFinder output from all 47 species
AMTR_s00101p00131830 CYCB1;1, CYCB1,... Cell cycle.regulation.cyclins.CYCB-type cyclin 0.07 OrthoFinder output from all 47 species
AT1G16330 CYCB3;1 cyclin b3;1 0.02 OrthoFinder output from all 47 species
AT1G20610 CYCB2;3 Cyclin B2;3 0.08 OrthoFinder output from all 47 species
AT1G76310 CYCB2;4 CYCLIN B2;4 0.1 OrthoFinder output from all 47 species
AT2G17620 CYCB2;1 Cyclin B2;1 0.03 OrthoFinder output from all 47 species
AT2G26760 CYCB1;4 Cyclin B1;4 0.07 OrthoFinder output from all 47 species
AT3G11520 CYCB1;3, CYC2 CYCLIN B1;3 0.1 OrthoFinder output from all 47 species
AT4G35620 CYCB2;2 Cyclin B2;2 0.1 OrthoFinder output from all 47 species
Adi_g010053 CYCB2;2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082397 CYCB2;2 regulatory protein *(CYCB) of cell cycle & original... 0.07 OrthoFinder output from all 47 species
Aev_g38549 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Aev_g40209 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ala_g23920 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.18 OrthoFinder output from all 47 species
Als_g12448 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Als_g15872 CYCB1;2, CYC1BAT not classified & original description: none 0.14 OrthoFinder output from all 47 species
Als_g16595 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.16 OrthoFinder output from all 47 species
Als_g29465 CYCB1;2, CYC1BAT regulatory protein *(CYCB) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Als_g52020 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.12 OrthoFinder output from all 47 species
Als_g58773 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.15 OrthoFinder output from all 47 species
Aop_g07135 CYCB2;4 regulatory protein *(CYCB) of cell cycle & original... 0.18 OrthoFinder output from all 47 species
Aop_g43830 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Aop_g70320 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene11290.t2 CYCB2;3, Aspi01Gene11290 regulatory protein *(CYCB) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene30752.t1 CYCB2;3, Aspi01Gene30752 regulatory protein *(CYCB) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene31815.t1 CYCB2;3, Aspi01Gene31815 regulatory protein *(CYCB) of cell cycle & original... 0.12 OrthoFinder output from all 47 species
Aspi01Gene63213.t2 CYCB2;3, Aspi01Gene63213 regulatory protein *(CYCB) of cell cycle & original... 0.08 OrthoFinder output from all 47 species
Azfi_s0065.g035814 CYCB2;3 component *(MED19) of head module of MEDIATOR... 0.05 OrthoFinder output from all 47 species
Azfi_s0113.g045905 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.07 OrthoFinder output from all 47 species
Azfi_s0230.g059168 CYCB2;4 not classified & original description: CDS=1-1479 0.07 OrthoFinder output from all 47 species
Azfi_s0872.g090692 CYCB2;4 not classified & original description: CDS=157-1278 0.04 OrthoFinder output from all 47 species
Ceric.06G046300.1 CYCB2;3, Ceric.06G046300 regulatory protein *(CYCB) of cell cycle & original... 0.14 OrthoFinder output from all 47 species
Ceric.18G071600.1 CYCB2;3, Ceric.18G071600 regulatory protein *(CYCB) of cell cycle & original... 0.13 OrthoFinder output from all 47 species
Ceric.21G047800.1 CYCB2;3, Ceric.21G047800 regulatory protein *(CYCB) of cell cycle & original... 0.19 OrthoFinder output from all 47 species
Ceric.24G055000.1 CYCB2;3, Ceric.24G055000 regulatory protein *(CYCB) of cell cycle & original... 0.1 OrthoFinder output from all 47 species
Ceric.26G002300.1 CYCB2;3, Ceric.26G002300 regulatory protein *(CYCB) of cell cycle & original... 0.17 OrthoFinder output from all 47 species
Ceric.31G034200.1 CYCB2;3, Ceric.31G034200 regulatory protein *(CYCB) of cell cycle & original... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000769.38 CYCB2;1 Cell cycle.regulation.cyclins.CYCB-type cyclin 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021312.11 CYCB2;2 G2/mitotic-specific cyclin S13-6 OS=Glycine max 0.01 OrthoFinder output from all 47 species
Cre08.g370401 CYCB2;2 Cyclin-B2-2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g13470 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.08 OrthoFinder output from all 47 species
Dac_g17049 CYCB2;4 regulatory protein *(CYCB) of cell cycle & original... 0.14 OrthoFinder output from all 47 species
Dac_g39037 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Dcu_g01163 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.17 OrthoFinder output from all 47 species
Dcu_g03733 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.16 OrthoFinder output from all 47 species
Dcu_g08761 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.18 OrthoFinder output from all 47 species
GSVIVT01009895001 CYCB2;3 Cell cycle.regulation.cyclins.CYCB-type cyclin 0.15 OrthoFinder output from all 47 species
GSVIVT01025781001 CYCB1;2, CYC1BAT Cell cycle.regulation.cyclins.CYCB-type cyclin 0.14 OrthoFinder output from all 47 species
GSVIVT01032782001 CYCB1;2, CYC1BAT Cell cycle.regulation.cyclins.CYCB-type cyclin 0.15 OrthoFinder output from all 47 species
GSVIVT01036739001 CYCB3;1 Cell cycle.regulation.cyclins.CYCB-type cyclin 0.12 OrthoFinder output from all 47 species
Gb_01761 CYCB3;1 cyclin (CYCB) 0.11 OrthoFinder output from all 47 species
Gb_03506 CYCB1;4 cyclin (CYCB) 0.08 OrthoFinder output from all 47 species
Gb_10664 CYCB2;3 cyclin (CYCB) 0.12 OrthoFinder output from all 47 species
Gb_27795 CYCB1;2, CYC1BAT G2/mitotic-specific cyclin-1 OS=Antirrhinum majus... 0.12 OrthoFinder output from all 47 species
LOC_Os01g59120.1 CYCB1;2,... cyclin (CYCB) 0.09 OrthoFinder output from all 47 species
LOC_Os04g47580.1 CYCB2;3, LOC_Os04g47580 cyclin (CYCB) 0.08 OrthoFinder output from all 47 species
LOC_Os05g41390.1 CYCB1;2,... cyclin (CYCB) 0.07 OrthoFinder output from all 47 species
LOC_Os06g51110.2 CYCB2;3, LOC_Os06g51110 cyclin (CYCB) 0.08 OrthoFinder output from all 47 species
Len_g05365 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.12 OrthoFinder output from all 47 species
Len_g11919 CYCB2;4 regulatory protein *(CYCB) of cell cycle & original... 0.06 OrthoFinder output from all 47 species
Len_g56071 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.17 OrthoFinder output from all 47 species
Lfl_g25214 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.11 OrthoFinder output from all 47 species
Lfl_g25818 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.14 OrthoFinder output from all 47 species
MA_10314137g0010 CYCB2;2 Cyclin-B1-5 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_10428837g0030 CYCB1;3, CYC2 cyclin (CYCB) 0.11 OrthoFinder output from all 47 species
MA_10433093g0020 CYCB2;3 Cyclin-B2-1 OS=Oryza sativa subsp. indica... 0.1 OrthoFinder output from all 47 species
MA_127335g0010 CYCB2;3 cyclin (CYCB) 0.02 OrthoFinder output from all 47 species
MA_311439g0010 CYCB1;3, CYC2 cyclin (CYCB) 0.05 OrthoFinder output from all 47 species
MA_855375g0010 CYCB2;3 Cyclin-B2-1 OS=Oryza sativa subsp. indica... 0.12 OrthoFinder output from all 47 species
Mp2g00590.1 CYCB2;3 cyclin (CYCB) 0.08 OrthoFinder output from all 47 species
Mp5g10030.1 CYCB2;2 cyclin (CYCB) 0.12 OrthoFinder output from all 47 species
Msp_g05360 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Msp_g07854 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.09 OrthoFinder output from all 47 species
Msp_g21114 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.08 OrthoFinder output from all 47 species
Msp_g42899 CYCB2;4 regulatory protein *(CYCB) of cell cycle & original... 0.14 OrthoFinder output from all 47 species
Nbi_g03000 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.16 OrthoFinder output from all 47 species
Nbi_g04270 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.1 OrthoFinder output from all 47 species
Nbi_g39363 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Ore_g41900 CYCB2;2 regulatory protein *(CYCB) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Ore_g42925 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Pir_g18672 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Ppi_g12194 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.11 OrthoFinder output from all 47 species
Ppi_g31931 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0200.g025590 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025884 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.1 OrthoFinder output from all 47 species
Smo230742 CYCB1;2, CYC1BAT Cell cycle.regulation.cyclins.CYCB-type cyclin 0.06 OrthoFinder output from all 47 species
Solyc01g009040.4.1 CYCB1;2,... cyclin (CYCB) 0.05 OrthoFinder output from all 47 species
Solyc02g082820.3.1 CYCB2;3, Solyc02g082820 cyclin (CYCB) 0.05 OrthoFinder output from all 47 species
Solyc03g032190.3.1 CYCB2;3, Solyc03g032190 cyclin (CYCB) 0.1 OrthoFinder output from all 47 species
Solyc07g066660.4.1 CYCB3;1, Solyc07g066660 cyclin (CYCB) 0.06 OrthoFinder output from all 47 species
Solyc10g078330.2.1 CYCB1;1, CYCB1,... cyclin (CYCB) 0.02 OrthoFinder output from all 47 species
Solyc10g080950.2.1 CYCB1;2,... cyclin (CYCB) 0.02 OrthoFinder output from all 47 species
Spa_g04211 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.1 OrthoFinder output from all 47 species
Spa_g08492 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Spa_g23146 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.14 OrthoFinder output from all 47 species
Spa_g43416 CYCA3;1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45315 CYCA1;1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50231 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.13 OrthoFinder output from all 47 species
Spa_g52264 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.06 OrthoFinder output from all 47 species
Spa_g53648 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.11 OrthoFinder output from all 47 species
Tin_g05068 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.07 OrthoFinder output from all 47 species
Tin_g12417 CYCB2;4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g39135 CYCB2;3 regulatory protein *(CYCB) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Zm00001e007244_P001 CYCB2;3, Zm00001e007244 cyclin (CYCB) 0.09 OrthoFinder output from all 47 species
Zm00001e019528_P002 CYCB1;2,... cyclin (CYCB) 0.07 OrthoFinder output from all 47 species
Zm00001e025467_P001 CYCB1;2,... Cyclin-B1-3 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Zm00001e027336_P001 CYCB1;2,... cyclin (CYCB) 0.05 OrthoFinder output from all 47 species
Zm00001e028899_P002 CYCB1;2,... cyclin (CYCB) 0.1 OrthoFinder output from all 47 species
Zm00001e030146_P001 CYCB2;3, Zm00001e030146 cyclin (CYCB) 0.03 OrthoFinder output from all 47 species
Zm00001e041485_P001 CYCB2;3, Zm00001e041485 cyclin (CYCB) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 329 446
IPR006671 Cyclin_N 201 327
No external refs found!