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  5. Sam_g16302

Sam_g16302


Description : ligand-gated cation channel *(GLR) & original description: none


Gene families : OG0000075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16302
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00172130 GLR2.7,... Solute transport.channels.GLR ligand-gated cation channel 0.02 OrthoFinder output from all 47 species
AT3G07520 GLR1.4, ATGLR1.4 glutamate receptor 1.4 0.02 OrthoFinder output from all 47 species
AT5G11210 GLR2.5, ATGLR2.5 glutamate receptor 2.5 0.03 OrthoFinder output from all 47 species
Ala_g14362 GLUR3, GLR3.4, ATGLR3.4 ligand-gated cation channel *(GLR) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g12536 GLR3.3, ATGLR3.3 ligand-gated cation channel *(GLR) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14399 GLR3.3, ATGLR3.3 ligand-gated cation channel *(GLR) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01014244001 GLR2.8, ATGLR2.8 Solute transport.channels.GLR ligand-gated cation channel 0.03 OrthoFinder output from all 47 species
GSVIVT01022297001 GLR3.6, ATGLR3.6 Solute transport.channels.GLR ligand-gated cation channel 0.02 OrthoFinder output from all 47 species
MA_10429302g0010 GLR2.5, ATGLR2.5 ligand-gated cation channel (GLR) 0.02 OrthoFinder output from all 47 species
MA_10434521g0010 GLR2.1, ATGLR2.1 ligand-gated cation channel (GLR) 0.01 OrthoFinder output from all 47 species
MA_958834g0010 ATGLR3.2,... ligand-gated cation channel (GLR) 0.02 OrthoFinder output from all 47 species
Mp1g01040.1 GLR3.3, ATGLR3.3 ligand-gated cation channel (GLR) 0.02 OrthoFinder output from all 47 species
Msp_g37768 ATGLR3.1, GLR2,... ligand-gated cation channel *(GLR) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005895 GLR3.3, ATGLR3.3 ligand-gated cation channel *(GLR) & original... 0.02 OrthoFinder output from all 47 species
Solyc06g063170.3.1 GLR2.8,... ligand-gated cation channel (GLR) 0.02 OrthoFinder output from all 47 species
Spa_g54501 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g25753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g34882 GLR3.3, ATGLR3.3 ligand-gated cation channel *(GLR) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated monoatomic ion channel activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
InterPro domains Description Start Stop
IPR001828 ANF_lig-bd_rcpt 69 426
IPR001320 Iontro_rcpt_C 833 862
IPR001638 Solute-binding_3/MltF_N 512 832
No external refs found!