Sam_g16270


Description : not classified & original description: none


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16270

Target Alias Description ECC score Gene Family Method Actions
Adi_g012573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g014847 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082672 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g106782 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07513 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g15632 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g18533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05514 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07137 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18203 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18219 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19286 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26434 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30870 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30884 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30893 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05723 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10554 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29464 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008666 No alias not classified & original description: CDS=1-2997 0.04 OrthoFinder output from all 47 species
Azfi_s0129.g048955 No alias not classified & original description: CDS=1-1935 0.02 OrthoFinder output from all 47 species
Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.01 OrthoFinder output from all 47 species
Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.02 OrthoFinder output from all 47 species
Azfi_s0254.g060427 No alias not classified & original description: CDS=1-2130 0.03 OrthoFinder output from all 47 species
Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.01 OrthoFinder output from all 47 species
Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.02 OrthoFinder output from all 47 species
Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.02 OrthoFinder output from all 47 species
Cba_g07445 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07705 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19873 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20804 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29993 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34917 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75131 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G020600.1 Ceric.05G020600 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G025600.1 Ceric.10G025600 not classified & original description: pacid=50611862... 0.02 OrthoFinder output from all 47 species
Ceric.14G038700.1 Ceric.14G038700 ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.14G076500.1 Ceric.14G076500 not classified & original description: pacid=50633826... 0.03 OrthoFinder output from all 47 species
Ceric.19G039900.1 Ceric.19G039900 not classified & original description: pacid=50575946... 0.02 OrthoFinder output from all 47 species
Ceric.29G083700.1 Ceric.29G083700 not classified & original description: pacid=50625623... 0.04 OrthoFinder output from all 47 species
Ceric.34G015500.1 OTP84, Ceric.34G015500 not classified & original description: pacid=50623596... 0.02 OrthoFinder output from all 47 species
Ceric.36G034200.1 Ceric.36G034200 not classified & original description: pacid=50568019... 0.02 OrthoFinder output from all 47 species
Ceric.37G043200.1 Ceric.37G043200 not classified & original description: pacid=50616612... 0.01 OrthoFinder output from all 47 species
Dac_g21332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22240 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g28876 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g29210 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g35455 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07441 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g14206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04932 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12593 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g07395 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g09569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g13927 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g22634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07764 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13804 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17001 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g17427 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04862 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07034 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12601 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18621 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02232 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03867 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g10292 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18868 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31432 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g43486 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011395 No alias not classified & original description: CDS=1-2424 0.02 OrthoFinder output from all 47 species
Sam_g25360 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g05090 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g06220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06768 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18112 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02094 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08736 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13334 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g29152 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g45774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003937 IMP cyclohydrolase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP HCCA
MF GO:0004834 tryptophan synthase activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006568 tryptophan metabolic process IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006586 indolalkylamine metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
BP GO:0042430 indole-containing compound metabolic process IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 278 325
IPR002885 Pentatricopeptide_repeat 513 559
IPR002885 Pentatricopeptide_repeat 178 224
IPR002885 Pentatricopeptide_repeat 612 660
IPR002885 Pentatricopeptide_repeat 395 443
IPR046848 E_motif 730 767
No external refs found!