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  5. Sam_g16130

Sam_g16130


Description : ubiquitin-dependent protease *(DA1) & original description: none


Gene families : OG0000918 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000918_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16130
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Aob_g05000 No alias ubiquitin-dependent protease *(DA1) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_39736 DAR2 Protein DA1-related 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os12g40490.1 LOC_Os12g40490 ubiquitin receptor regulatory protein (DA1) 0.03 OrthoFinder output from all 47 species
Len_g02808 No alias ubiquitin-dependent protease *(DA1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_882912g0010 No alias ubiquitin receptor regulatory protein (DA1) 0.02 OrthoFinder output from all 47 species
Mp8g01060.1 DA1 ubiquitin receptor regulatory protein (DA1) 0.02 OrthoFinder output from all 47 species
Pir_g40645 No alias ubiquitin-dependent protease *(DA1) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g09075 No alias ubiquitin-dependent protease *(DA1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g079840.4.1 DA1, Solyc04g079840 ubiquitin receptor regulatory protein (DA1) 0.02 OrthoFinder output from all 47 species
Zm00001e003135_P001 Zm00001e003135 ubiquitin receptor regulatory protein (DA1) 0.02 OrthoFinder output from all 47 species
Zm00001e005086_P004 Zm00001e005086 ubiquitin receptor regulatory protein (DA1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022087 DA1-like_dom 253 455
IPR001781 Znf_LIM 104 158
No external refs found!