Sam_g16058

Description : TGA-type transcription factor & original description: none

Gene families : OG0000342 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000342_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g16058
Cluster	HCCA: Cluster_168

Target	Alias	Description	ECC score	Gene Family Method
AT1G22070	TGA3	TGA1A-related gene 3	0.02	OrthoFinder output from all 47 species
AT5G06960	TGA5, OBF5	OCS-element binding factor 5	0.02	OrthoFinder output from all 47 species
Adi_g057891	TGA2, AHBP-1B	TGA-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g25198	TGA2, AHBP-1B	TGA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g37760	TGA2, AHBP-1B	TGA-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene69725.t1	TGA2, AHBP-1B,...	NPR1-interactive transcription factor *(TGA) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0005.g008907	TGA2, AHBP-1B	TGA-type transcription factor & original description: CDS=30-962	0.02	OrthoFinder output from all 47 species
Azfi_s0109.g045306	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.03	OrthoFinder output from all 47 species
Ceric.21G055300.1	TGA2, AHBP-1B,...	TGA-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g17296	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.02	OrthoFinder output from all 47 species
Dcu_g37725	TGA2, AHBP-1B	TGA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g12971	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01011929001	PAN	RNA biosynthesis.transcriptional activation.bZIP...	0.02	OrthoFinder output from all 47 species
GSVIVT01036649001	TGA2, AHBP-1B	RNA biosynthesis.transcriptional activation.bZIP...	0.03	OrthoFinder output from all 47 species
LOC_Os06g15480.2	PAN, LOC_Os06g15480	transcription factor (bZIP). transcription factor (TGA)....	0.05	OrthoFinder output from all 47 species
Len_g50387	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.03	OrthoFinder output from all 47 species
Msp_g08857	TGA2, AHBP-1B	TGA-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013911	TGA2, AHBP-1B	TGA-type transcription factor & original description: CDS=62-1078	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019759	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0205.g025720	TGA2, AHBP-1B	TGA-type transcription factor & original description: CDS=82-1137	0.05	OrthoFinder output from all 47 species
Smo404596	TGA2, AHBP-1B	RNA biosynthesis.transcriptional activation.bZIP...	0.03	OrthoFinder output from all 47 species
Solyc04g011670.3.1	TGA1, Solyc04g011670	transcription factor (bZIP). transcription factor (TGA)	0.03	OrthoFinder output from all 47 species
Solyc05g009660.4.1	PAN, Solyc05g009660	transcription factor (bZIP). transcription factor (TGA)....	0.05	OrthoFinder output from all 47 species
Zm00001e024141_P002	bZIP21, TGA9,...	transcription factor (bZIP). transcription factor (TGA)	0.02	OrthoFinder output from all 47 species
Zm00001e030941_P001	PAN, Zm00001e030941	transcription factor (bZIP). transcription factor (TGA)	0.02	OrthoFinder output from all 47 species
Zm00001e037595_P002	TGA10, bZIP65,...	transcription factor (bZIP). transcription factor (TGA)	0.02	OrthoFinder output from all 47 species
Zm00001e039374_P001	bZIP21, TGA9,...	transcription factor (TGA)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025422	TGA_domain	143	218
IPR004827	bZIP	63	109

External Links

No external refs found!

Sam_g16058

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation