Sam_g15947

Description : MRM2-type rRNA methyltransferase & original description: none

Gene families : OG0004018 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004018_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g15947
Cluster	HCCA: Cluster_172

Target	Alias	Description	ECC score	Gene Family Method
AT4G25730	No alias	FtsJ-like methyltransferase family protein	0.04	OrthoFinder output from all 47 species
Ceric.33G005200.1	Ceric.33G005200	MRM2-type rRNA methyltransferase & original description:...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000217.16	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cre12.g529500	No alias	No description available	0.05	OrthoFinder output from all 47 species
Dcu_g09125	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g01708	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08608	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01023801001	No alias	No description available	0.03	OrthoFinder output from all 47 species
LOC_Os05g49230.1	LOC_Os05g49230	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Lfl_g02148	No alias	MRM2-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
MA_158214g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp8g14990.1	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Nbi_g01309	No alias	MRM2-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g11085	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Smo141188	No alias	No description available	0.04	OrthoFinder output from all 47 species
Smo404107	No alias	No description available	0.03	OrthoFinder output from all 47 species
Smo78506	No alias	No description available	0.04	OrthoFinder output from all 47 species
Solyc11g020810.2.1	Solyc11g020810	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc11g020820.2.1	Solyc11g020820	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Spa_g06497	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g15529	No alias	MRM2-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e026556_P001	Zm00001e026556	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e032456_P001	Zm00001e032456	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002877	RNA_MeTrfase_FtsJ_dom	24	203
IPR024576	rRNA_MeTfrase_Spb1_DUF3381	236	384
IPR012920	rRNA_MeTfrase_SPB1-like_C	612	800

External Links

No external refs found!

Sam_g15947

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation