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Description : component *(THOC1/HPR1) of mRNP trafficking THO subcomplex & original description: none
Gene families : OG0005828 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005828_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sam_g15781 | |
| Cluster | HCCA: Cluster_172 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Aev_g07899 | AtHPR1, AtTHO1,... | component *(THOC1/HPR1) of mRNP trafficking THO... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g08106 | AtHPR1, AtTHO1,... | component *(THOC1/HPR1) of mRNP trafficking THO... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0252.g060313 | AtHPR1, AtTHO1,... | component *(THOC1/HPR1) of mRNP trafficking THO... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g27882 | AtHPR1, AtTHO1,... | component *(THOC1/HPR1) of mRNP trafficking THO... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g09998 | AtHPR1, AtTHO1,... | component *(THOC1/HPR1) of mRNP trafficking THO... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_11418 | AtHPR1, AtTHO1,... | component THOC1/HPR1 of mRNP trafficking THO subcomplex | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g01970.1 | AtHPR1, AtTHO1,... | component THOC1/HPR1 of mRNP trafficking THO subcomplex | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g19049 | AtHPR1, AtTHO1,... | component *(THOC1/HPR1) of mRNP trafficking THO... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g03945 | AtHPR1, AtTHO1,... | component *(THOC1/HPR1) of mRNP trafficking THO... | 0.02 | OrthoFinder output from all 47 species | |
| Smo96989 | AtHPR1, AtTHO1,... | RNA processing.messenger ribonucleoprotein particle... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g096600.4.1 | AtHPR1, AtTHO1,... | component THOC1/HPR1 of mRNP trafficking THO subcomplex | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004519 | endonuclease activity | IEP | HCCA |
| MF | GO:0005384 | manganese ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006302 | double-strand break repair | IEP | HCCA |
| BP | GO:0006310 | DNA recombination | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0006873 | cellular monoatomic ion homeostasis | IEP | HCCA |
| BP | GO:0006875 | cellular metal ion homeostasis | IEP | HCCA |
| BP | GO:0006950 | response to stress | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| BP | GO:0015074 | DNA integration | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| BP | GO:0019725 | cellular homeostasis | IEP | HCCA |
| BP | GO:0030003 | cellular monoatomic cation homeostasis | IEP | HCCA |
| BP | GO:0030026 | cellular manganese ion homeostasis | IEP | HCCA |
| MF | GO:0030145 | manganese ion binding | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0042592 | homeostatic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0046915 | transition metal ion transmembrane transporter activity | IEP | HCCA |
| BP | GO:0046916 | cellular transition metal ion homeostasis | IEP | HCCA |
| BP | GO:0048878 | chemical homeostasis | IEP | HCCA |
| BP | GO:0050801 | monoatomic ion homeostasis | IEP | HCCA |
| BP | GO:0050896 | response to stimulus | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0055065 | metal ion homeostasis | IEP | HCCA |
| BP | GO:0055071 | manganese ion homeostasis | IEP | HCCA |
| BP | GO:0055076 | transition metal ion homeostasis | IEP | HCCA |
| BP | GO:0055080 | monoatomic cation homeostasis | IEP | HCCA |
| BP | GO:0055082 | cellular chemical homeostasis | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0098771 | inorganic ion homeostasis | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR021861 | THO_THOC1 | 121 | 523 |
| No external refs found! |