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  5. Sam_g15552

Sam_g15552


Description : subfamily ABCG transporter & original description: none


Gene families : OG0005321 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005321_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15552

Target Alias Description ECC score Gene Family Method Actions
Adi_g051871 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g02456 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13953 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000789.12 No alias ABC transporter G family member 7 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g01707 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g04872 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05491 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17588 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g008350.3.1 Solyc05g008350 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Spa_g15739 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000966 RNA 5'-end processing IEP HCCA
BP GO:0001682 tRNA 5'-leader removal IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004852 uroporphyrinogen-III synthase activity IEP HCCA
BP GO:0006353 DNA-templated transcription termination IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030677 ribonuclease P complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0099116 tRNA 5'-end processing IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 375 585
IPR003439 ABC_transporter-like_ATP-bd 76 229
IPR043926 ABCG_dom 259 357
No external refs found!