Sam_g15535

Description : subfamily ABCD transporter & original description: none

Gene families : OG0002493 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002493_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g15535

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00199450	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
AT1G54350	No alias	ABC transporter family protein	0.03	OrthoFinder output from all 47 species
Adi_g008075	No alias	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g04497	No alias	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g15148	No alias	subfamily ABCD transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g13935	No alias	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g19950	No alias	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g24595	No alias	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01036685001	No alias	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
LOC_Os01g11946.1	LOC_Os01g11946	subfamily ABCD transporter	0.03	OrthoFinder output from all 47 species
Lfl_g40224	No alias	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
Solyc12g017420.2.1	Solyc12g017420	subfamily ABCD transporter	0.03	OrthoFinder output from all 47 species
Zm00001e026058_P001	Zm00001e026058	subfamily ABCD transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	HCCA
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	173	378

External Links

No external refs found!

Sam_g15535

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation