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  5. Sam_g15317

Sam_g15317


Description : polymerase-II assembly factor *(RPAP3) & original description: none


Gene families : OG0003637 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003637_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15317

Target Alias Description ECC score Gene Family Method Actions
Adi_g107730 TPR5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08600 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.03 OrthoFinder output from all 47 species
Als_g02491 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.03 OrthoFinder output from all 47 species
Ceric.20G085400.1 TPR5, Ceric.20G085400 polymerase-II assembly factor *(RPAP3) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g48721 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.03 OrthoFinder output from all 47 species
Pir_g01630 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR025986 RPAP3-like_C 364 453
No external refs found!