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  5. Sam_g15174

Sam_g15174


Description : not classified & original description: none


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15174

Target Alias Description ECC score Gene Family Method Actions
Ala_g01156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01978.t1 Aspi01Gene01978 histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G051000.1 Ceric.14G051000 histone *(H3) & original description: pacid=50634481... 0.02 OrthoFinder output from all 47 species
Cre16.g649900 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Cre16.g650300 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Len_g04155 No alias histone H3 variant *(CENH3) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10766 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004852 uroporphyrinogen-III synthase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 33 144
No external refs found!