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  5. Sam_g14955

Sam_g14955


Description : assembly factor involved in ITS1 rRNA removal *(BRIX1) & original description: none


Gene families : OG0005675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005675_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14955

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00215770 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AT1G52930 No alias Ribosomal RNA processing Brix domain protein 0.02 OrthoFinder output from all 47 species
Aop_g02466 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0076.g037831 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.02 OrthoFinder output from all 47 species
Dac_g07263 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.03 OrthoFinder output from all 47 species
Dde_g08981 No alias assembly factor involved in ITS1 rRNA removal *(BRIX1) &... 0.03 OrthoFinder output from all 47 species
MA_14692g0010 No alias BRX1 assembly factor involved in ITS1 rRNA removal 0.02 OrthoFinder output from all 47 species
Pp3c16_10600V3.1 Pp3c16_10600 Ribosomal RNA processing Brix domain protein 0.01 OrthoFinder output from all 47 species
Smo66840 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Solyc04g016380.3.1 Solyc04g016380 BRX1 assembly factor involved in ITS1 rRNA removal 0.02 OrthoFinder output from all 47 species
Zm00001e022842_P003 Zm00001e022842 BRX1 assembly factor involved in ITS1 rRNA removal 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 66 255
No external refs found!