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  5. Sam_g14661

Sam_g14661


Description : HD2-type histone deacetylase *(HD2/HDT) & original description: none


Gene families : OG0002165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002165_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14661

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00043p00194480 HD2, HDA4, HD2B,... No description available 0.02 OrthoFinder output from all 47 species
AT2G27840 HDA13, HDT04, HDT4 histone deacetylase-related / HD-related 0.04 OrthoFinder output from all 47 species
AT3G44750 HDA3, ATHD2A, HDT1, HD2A histone deacetylase 3 0.04 OrthoFinder output from all 47 species
Als_g54155 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Aop_g12332 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.06 OrthoFinder output from all 47 species
Aop_g15503 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene25677.t1 HDA3, ATHD2A,... HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Cba_g05176 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.04 OrthoFinder output from all 47 species
Ceric.33G031600.1 HDA3, ATHD2A,... HD2-type histone deacetylase *(HD2/HDT) & original... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000388.65 ATFKBP53, FKBP53 Protein modification.protein folding and quality... 0.04 OrthoFinder output from all 47 species
Dac_g11095 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g41486 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.05 OrthoFinder output from all 47 species
Dde_g20303 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g10269 HDA13, HDT04, HDT4 HD2-type histone deacetylase *(HD2/HDT) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g20489 HDA3, ATHD2A, HDT1, HD2A peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01031404001 HDA3, ATHD2A, HDT1, HD2A Chromatin organisation.histone modifications.histone... 0.07 OrthoFinder output from all 47 species
Gb_38523 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os05g51830.1 HDT3, HD2C,... histone deacetylase (HDT/HD2) 0.07 OrthoFinder output from all 47 species
Len_g17092 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.05 OrthoFinder output from all 47 species
MA_118767g0010 HDA3, ATHD2A, HDT1, HD2A histone deacetylase (HDT/HD2) 0.02 OrthoFinder output from all 47 species
MA_3905g0020 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_601245g0010 No alias histone deacetylase (HDT/HD2) 0.06 OrthoFinder output from all 47 species
Mp5g10240.1 HDA3, ATHD2A, HDT1, HD2A histone deacetylase (HDT/HD2) 0.04 OrthoFinder output from all 47 species
Nbi_g12444 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Ore_g06815 HD2, HDA4, HD2B,... HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Ore_g34458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07356 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.04 OrthoFinder output from all 47 species
Smo428242 No alias Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Solyc09g009030.4.1 HDA3, ATHD2A,... histone deacetylase (HDT/HD2) 0.06 OrthoFinder output from all 47 species
Solyc10g085560.3.1 HDT3, HD2C,... Histone deacetylase HDT1 OS=Solanum chacoense... 0.03 OrthoFinder output from all 47 species
Solyc11g066840.3.1 HD2, HDA4, HD2B,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g40541 HDT3, HD2C HD2-type histone deacetylase *(HD2/HDT) & original... 0.06 OrthoFinder output from all 47 species
Tin_g20431 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e018891_P001 HDA3, ATHD2A,... histone deacetylase (HDT/HD2) 0.02 OrthoFinder output from all 47 species
Zm00001e027707_P004 HDT3, HD2C,... histone deacetylase (HDT/HD2) 0.08 OrthoFinder output from all 47 species
Zm00001e028512_P001 HDA3, ATHD2A,... histone deacetylase (HDT/HD2) 0.03 OrthoFinder output from all 47 species
Zm00001e028513_P001 HDA3, ATHD2A,... histone deacetylase (HDT/HD2) 0.03 OrthoFinder output from all 47 species
Zm00001e032246_P002 HDA3, ATHD2A,... histone deacetylase (HDT/HD2) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR041232 NPL 3 92
No external refs found!