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  5. Sam_g14601

Sam_g14601


Description : component *(CAP-E2/SMC2) of condensin I/II complex & original description: none


Gene families : OG0005512 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005512_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14601

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193070 ATSMC2,... Cell cycle.mitosis and meiosis.chromatin... 0.05 OrthoFinder output from all 47 species
AT3G47460 ATSMC2 Structural maintenance of chromosomes (SMC) family protein 0.06 OrthoFinder output from all 47 species
AT5G62410 TTN3, ATSMC4,... structural maintenance of chromosomes 2 0.1 OrthoFinder output from all 47 species
Adi_g117141 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
Aev_g40103 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species
Ala_g23199 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.18 OrthoFinder output from all 47 species
Als_g01195 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.16 OrthoFinder output from all 47 species
Aop_g05581 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.12 OrthoFinder output from all 47 species
Aspi01Gene72499.t1 ATSMC2, Aspi01Gene72499 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Azfi_s0003.g007776 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.03 OrthoFinder output from all 47 species
Ceric.12G044400.1 ATSMC2, Ceric.12G044400 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.12 OrthoFinder output from all 47 species
Ceric.15G020500.1 ATSMC2, Ceric.15G020500 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.55 TTN3, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.06 OrthoFinder output from all 47 species
Cre02.g086650 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.04 OrthoFinder output from all 47 species
Dac_g14763 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.11 OrthoFinder output from all 47 species
Dcu_g03186 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.15 OrthoFinder output from all 47 species
GSVIVT01018715001 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.05 OrthoFinder output from all 47 species
Gb_17843 ATSMC2 component CAP-E2/SMC2 of condensin I/II complex 0.09 OrthoFinder output from all 47 species
LOC_Os01g67740.1 ATSMC2, LOC_Os01g67740 component CAP-E2/SMC2 of condensin I/II complex 0.03 OrthoFinder output from all 47 species
Len_g12256 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species
Len_g41103 TTN3, ATSMC4,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g37430 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.13 OrthoFinder output from all 47 species
MA_15346g0010 ATSMC2 component CAP-E2/SMC2 of condensin I/II complex 0.07 OrthoFinder output from all 47 species
Mp1g04330.1 ATSMC2 component CAP-E2/SMC2 of condensin I/II complex 0.11 OrthoFinder output from all 47 species
Msp_g14469 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.18 OrthoFinder output from all 47 species
Nbi_g02470 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.16 OrthoFinder output from all 47 species
Ppi_g29913 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0197.g025517 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Smo137981 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.09 OrthoFinder output from all 47 species
Solyc03g093250.2.1 ATSMC2, Solyc03g093250 component CAP-E2/SMC2 of condensin I/II complex 0.03 OrthoFinder output from all 47 species
Solyc03g093260.3.1 ATSMC2, Solyc03g093260 component CAP-E2/SMC2 of condensin I/II complex 0.06 OrthoFinder output from all 47 species
Spa_g41237 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Tin_g10631 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.09 OrthoFinder output from all 47 species
Zm00001e018930_P001 ATSMC2, Zm00001e018930 component CAP-E2/SMC2 of condensin I/II complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR010935 SMC_hinge 519 637
IPR003395 RecF/RecN/SMC_N 2 1161
No external refs found!