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  5. Sam_g14275

Sam_g14275


Description : not classified & original description: none


Gene families : OG0005880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005880_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14275

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00256630 evm_27.TU.AmTr_v1... Polyadenylate-binding protein 8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Aev_g13294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G030000.1 Ceric.28G030000 not classified & original description: pacid=50570416... 0.04 OrthoFinder output from all 47 species
Cre16.g685200 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g40735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g52200.1 LOC_Os04g52200 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g10771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43027 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo182522 No alias Polyadenylate-binding protein 8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc02g081940.3.1 Solyc02g081940 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g15174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041627_P001 Zm00001e041627 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e042214_P001 Zm00001e042214 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 744 812
IPR000504 RRM_dom 522 581
IPR000504 RRM_dom 4 71
IPR000504 RRM_dom 640 715
IPR000504 RRM_dom 325 395
No external refs found!