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  5. Sam_g14247

Sam_g14247


Description : not classified & original description: none


Gene families : OG0000954 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000954_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14247

Target Alias Description ECC score Gene Family Method Actions
AT5G27650 No alias Tudor/PWWP/MBT superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g113339 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g29262 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g64510 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G017200.1 Ceric.03G017200 not classified & original description: pacid=50571554... 0.03 OrthoFinder output from all 47 species
Ceric.04G012100.1 Ceric.04G012100 not classified & original description: pacid=50630823... 0.02 OrthoFinder output from all 47 species
Ceric.24G040200.1 Ceric.24G040200 not classified & original description: pacid=50630010... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000808.1 CHR01, CHR1,... No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.25 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g20092 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016344001 No alias Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01032455001 No alias Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os05g38810.1 LOC_Os05g38810 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g20479 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g24154 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g48852 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38053 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10197194g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_8546g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g14266 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43036 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05139 No alias N-methyltransferase component *(ATX3/4/5) of COMPASS... 0.02 OrthoFinder output from all 47 species
Pir_g06451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g34099 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g086750.3.1 Solyc02g086750 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g31146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41391 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027258_P002 Zm00001e027258 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e031849_P002 Zm00001e031849 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000313 PWWP_dom 249 331
No external refs found!