Sam_g14037


Description : component *(PMS1) of MLH1-PMS1 heterodimer & original description: none


Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14037

Target Alias Description ECC score Gene Family Method Actions
AT4G02460 PMS1 DNA mismatch repair protein, putative 0.02 OrthoFinder output from all 47 species
Adi_g058158 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.04 OrthoFinder output from all 47 species
Aop_g10894 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene67732.t1 PMS1, Aspi01Gene67732 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G086600.1 PMS1, Ceric.21G086600 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01027985001 PMS1 DNA damage response.DNA repair mechanisms.mismatch... 0.03 OrthoFinder output from all 47 species
LOC_Os02g37920.1 PMS1, LOC_Os02g37920 component PMS1 of MLH1-PMS1 heterodimer 0.03 OrthoFinder output from all 47 species
Ppi_g01341 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR013507 DNA_mismatch_S5_2-like 223 340
IPR014790 MutL_C 782 950
No external refs found!