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  5. Sam_g13888

Sam_g13888


Description : tRNA 4-demethylwyosine synthase *(TYW1) & original description: none


Gene families : OG0006618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13888

Target Alias Description ECC score Gene Family Method Actions
AT1G75200 No alias flavodoxin family protein / radical SAM domain-containing protein 0.02 OrthoFinder output from all 47 species
Ala_g35438 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.05G054200.1 Ceric.05G054200 tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.05 OrthoFinder output from all 47 species
Cre14.g623300 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.01 OrthoFinder output from all 47 species
GSVIVT01009707001 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.05 OrthoFinder output from all 47 species
LOC_Os03g56390.1 LOC_Os03g56390 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.02 OrthoFinder output from all 47 species
Lfl_g35032 No alias tRNA 4-demethylwyosine synthase *(TYW1) & original... 0.02 OrthoFinder output from all 47 species
Mp5g22650.1 No alias S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.04 OrthoFinder output from all 47 species
Zm00001e005848_P001 Zm00001e005848 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0010181 FMN binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013917 tRNA_wybutosine-synth 625 688
IPR007197 rSAM 441 622
IPR008254 Flavodoxin/NO_synth 144 286
No external refs found!