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  5. Sam_g13834

Sam_g13834


Description : bHLH-type transcription factor & original description: none


Gene families : OG0000245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13834

Target Alias Description ECC score Gene Family Method Actions
AT1G32640 ATMYC2, MYC2,... Basic helix-loop-helix (bHLH) DNA-binding family protein 0.02 OrthoFinder output from all 47 species
AT4G17880 No alias Basic helix-loop-helix (bHLH) DNA-binding family protein 0.02 OrthoFinder output from all 47 species
AT5G46760 No alias Basic helix-loop-helix (bHLH) DNA-binding family protein 0.04 OrthoFinder output from all 47 species
AT5G46830 NIG1, ATNIG1 NACL-inducible gene 1 0.02 OrthoFinder output from all 47 species
Adi_g128176 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g31841 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02315 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g59208 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00807 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01027412001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
LOC_Os07g11020.1 BHLH42, TT8,... Basic helix-loop-helix protein A OS=Pisum sativum... 0.02 OrthoFinder output from all 47 species
LOC_Os10g42430.1 ATMYC2, MYC2,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Len_g56958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_17689g0010 MYC6.2, GL3 transcription factor (bHLH). bHLH-IVa-class iron... 0.02 OrthoFinder output from all 47 species
MpVg00340.1 ATMYC2, MYC2,... No annotation 0.01 OrthoFinder output from all 47 species
Msp_g14087 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g31120 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49636 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016369_P002 Zm00001e016369 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e041498_P001 EGL1, EGL3,... transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019786 Atg8-specific peptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR025610 MYC/MYB_N 54 237
IPR011598 bHLH_dom 622 667
No external refs found!