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  5. Sam_g13591

Sam_g13591


Description : component *(MAG2) of DSL1 (Depends-on-SLY1) complex & original description: none


Gene families : OG0006233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13591

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00255200 MAG2,... Vesicle trafficking.target membrane tethering.DSL1... 0.02 OrthoFinder output from all 47 species
Ceric.03G010200.1 MAG2, Ceric.03G010200 component *(MAG2) of DSL1 (Depends-on-SLY1) complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g01621 MAG2 component *(MAG2) of DSL1 (Depends-on-SLY1) complex &... 0.06 OrthoFinder output from all 47 species
LOC_Os07g48720.1 LOC_Os07g48720 component MAG2 of DSL1 (Depends-on-SLY1) complex 0.02 OrthoFinder output from all 47 species
Msp_g21596 MAG2 component *(MAG2) of DSL1 (Depends-on-SLY1) complex &... 0.02 OrthoFinder output from all 47 species
Ore_g16041 MAG2 component *(MAG2) of DSL1 (Depends-on-SLY1) complex &... 0.03 OrthoFinder output from all 47 species
Pnu_g25095 MAG2 component *(MAG2) of DSL1 (Depends-on-SLY1) complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0113.g020836 MAG2 component *(MAG2) of DSL1 (Depends-on-SLY1) complex &... 0.02 OrthoFinder output from all 47 species
Spa_g17227 MAG2 component *(MAG2) of DSL1 (Depends-on-SLY1) complex &... 0.04 OrthoFinder output from all 47 species
Tin_g15016 MAG2 component *(MAG2) of DSL1 (Depends-on-SLY1) complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e015847_P002 MAG2, Zm00001e015847 component MAG2 of DSL1 (Depends-on-SLY1) complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA Interproscan
CC GO:0070939 Dsl1/NZR complex IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007528 RINT1_Tip20 317 847
No external refs found!