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  5. Sam_g13556

Sam_g13556


Description : component *(POP1) of RNA-dependent RNase P complex & original description: none


Gene families : OG0005078 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005078_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13556

Target Alias Description ECC score Gene Family Method Actions
Aop_g26723 No alias component *(POP1) of RNA-dependent RNase P complex &... 0.02 OrthoFinder output from all 47 species
Ceric.26G047600.1 Ceric.26G047600 component *(POP1) of RNA-dependent RNase P complex &... 0.02 OrthoFinder output from all 47 species
LOC_Os11g45250.1 LOC_Os11g45250 component POP1 of RNA-dependent RNase P complex 0.02 OrthoFinder output from all 47 species
Len_g47049 No alias component *(POP1) of RNA-dependent RNase P complex &... 0.02 OrthoFinder output from all 47 species
MA_10429688g0010 No alias component POP1 of RNA-dependent RNase P complex 0.02 OrthoFinder output from all 47 species
Mp3g16910.1 No alias component POP1 of RNA-dependent RNase P complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0000731 DNA synthesis involved in DNA repair IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
MF GO:0008193 tRNA guanylyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012590 POPLD_dom 513 568
IPR009723 Pop1_N 158 215
No external refs found!